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optional output. stores variances per cell. information is stored in variances per cell and variances in raw data. for example, the data.var[‘gene_ids’] will be stored in variances per cell with the barcode data.var[‘barcode’] as the header. the barcode field stores cell barcode. the expression field records the expression of the gene. the filter and filtering criteria in the input data is applied to the whole data, not per cell. see above for the obs field for per-cell attributes.
optional output. filtering per cell-type. per-cell variables will be stored in a separate files. the naming of the files are cell_name_var.summaries, where cell_name is the cell barcode. the variable information is stored in the variables.csv file, the naming of which is cell_name_var.variables.csv. these files are sorted in ascending order according to the number of cells the variable has been filtered out, as opposed to all cells with the same barcode.
sorting cell barcodes. the sorting is done either by the names of the included clusters (by barcodes, if all barcodes are included in the data), or by the names of clusters (by barcodes). the names of clusters can be either by barcodes or by barcodes. for each barcodes, multiple of barcodes will be included in the data. this file has one sheet. the sheet records the sorted cell barcodes. see above for the obs field for per-cell attributes.